http://pastebin.com/u/bualdootprobably .... its just reading the db ... why dont you post the offending php script on pastebin
There are four pastes there that I think have to do with it. They are just the regular Private Hive Tools files though. I'm not really sure if they are the right files. I looked through many files, and these are the ones that I think pull the location information, and show it on the PHT live map.
Precise Base Building from what I understand changes the worldspace information to an array instead of a string. Or maybe it was to a string instead of an array. From my limited programming knowledge, if that's true, I'm sure that's what is causing the problem. I just don't know what to change in PHT's in order to fix it.